Researchers identify novel drug combinations to combat Lyme persister cells

Researchers identify novel drug combinations to combat Lyme persister cells

There continues to be treatment failures of Lyme disease (LD) in some patients despite the use of various antibiotic therapies. Researchers from Johns Hopkins University recently published findings from in vitro studies that suggest novel treatment approaches, including multiple drug combinations, may be effective in treating lingering symptoms of LD. [1, 2]

by Daniel J. Cameron, MD MPH

In a study entitled “A Drug Combination Screen Identifies Drugs Active against Amoxicillin-Induced Round Bodies of In Vitro Borrelia burgdorferi Persisters from an FDA Drug Library,” Feng and colleagues hypothesize that when Borrelia burgdorferi, the Lyme bacterium, is confronted with certain stressors, such as starvation or exposure to antibiotics, the spirochete can transform into a “round body” or “persister” form. When examined in vitro, these forms appear to be resistant to customary first-line antibiotics used to treat Lyme disease.

“It is most likely that a single drug may not effectively kill all bacterial populations including morphological variants,” states Feng, lead author of a new study.

“It is most likely that a single drug may not effectively kill all bacterial populations including morphological variants,” states Feng. [2] The authors found, “In vitro, B. burgdorferi developed increasing antibiotic tolerance as morphology changed from typical spirochetal form in log phase growth to variant round body and microcolony forms in stationary phase.”

Based on their in vitro studies, the authors identified novel drug combinations they believe are effective in combatting round body persisters. “These morphological variants of B. burgdorferi have different antibiotic susceptibilities, and our recent study showed that some drug combinations are more effective against aggregated B. burgdorferi persisters than single drugs.” [2]

Combination treatment which included daptomycin was found to be the most effective in their in vitro studies. “Daptomycin plus doxycycline and cefoperazone eradicated the most resistant microcolony form of B. burgdorferi persisters, and did not yield viable spirochetes upon subculturing,” reports Feng, “suggesting durable killing that was not achieved by any other two or three drug combinations.” [3]

Feng and colleagues describe a persister model to identify additional drugs that did not show good activity in the previous drug screens against the stationary phase of B. burgdorferi. [2] Microscopic examination showed that 96% of the B. burgdorferi spirochetes could be induced into round bodies by amoxicillin in a 5-day-old culture after 3 days with 50 mg/ml amoxicillin. The 6-day or older cultures could not be induced to morph into round body forms completely (<80%) with even 100 mg/ml amoxicillin. [2]

Using their amoxicillin-induced round body model, the researchers identified new drug candidates that may be successful in treating ongoing LD symptoms that do not respond to first-line antibiotic therapies.

“We identified 23 drug candidates that have higher activity against the round bodies of B. burgdorferi than either amoxicillin or doxycycline,” reports Feng and colleagues. [2]

Their amoxicillin-induced round body model validated the success of daptomycin and clofazimine shown to be effective against stationary phase B. burgdorferi persisters. [2] Their model also found artemisinin, ciprofloxacin, nifuroxime, fosfomycin, chlortetracycline, sulfacetamide, sulfamethoxypyridazine and sulfathiozole to be effective. [2]

It is unclear which, if any, antibiotics or combinations would be effective until further in vitro and in vivo research is completed. Currently, artemisinin, ciprofloxacin, daptomycin and clofazimine are commercially available for other indications.

• Daptomycin is an intravenous antibiotic used in the treatment of systemic and life-threatening infections caused by Gram-positive organisms.

• Clofazimine is used in combination with rifampicin and dapsone as a multi-drug therapy for the treatment of leprosy. It is no longer commercially available in the United States.

• Nifuroxime is a topical nitrofuran with antifungal properties available in a number of countries worldwide.

• Fosfomycin (marketed in the US under MONUROL) is a synthetic, broad spectrum, bactericidal antibiotic for oral administration indicated only for the treatment of uncomplicated urinary tract infections in women due to susceptible strains of Escherichia coli and Enterococcus faecalis.

• Chlortetracycline is a tetracycline antibiotic for use in beef cattle, non-lactating dairy cattle, and sheep.

• Sulfacetamide is a 10% topical lotion approved for the treatment of acne and seborrheic dermatitis.

• Sulfamethoxypyridazine is a sulfonamide antibacterial prescribed for vaginal irritation, and severe acute thrush.

• Sulfathiazole is a short-acting sulfa drug used until less toxic alternatives were discovered. It is still occasionally used, sometimes in aquariums.

It remains unclear as to how important round body forms are in vivo. Feng and colleagues note that round bodies have been described in human infections including brain tissue, [4] but their significance remains unclear. [5] “Some have suggested that these round body forms might be a protective mechanism to overcome adverse environmental conditions,” states Feng. “These round bodies appear to have both lower metabolism and greater resistance to antibiotic treatment.”

Developing novel treatment regimens for Lyme disease takes much time, effort and is a costly endeavor. These in vitro studies have introduced novel approaches to therapy that are worthy of further studies.



  1. Feng, J., et al., Identification of Additional Anti-Persister Activity against Borrelia burgdorferi from an FDA Drug Library. Antibiotics (Basel), 2015. 4(3): p. 397-410.
  2. Feng, J., et al., A Drug Combination Screen Identifies Drugs Active against Amoxicillin-Induced Round Bodies of In Vitro Borrelia burgdorferi Persisters from an FDA Drug Library. Front Microbiol, 2016. 7: p. 743.
  3. Feng, J., P.G. Auwaerter, and Y. Zhang, Drug combinations against Borrelia burgdorferi persisters in vitro: eradication achieved by using daptomycin, cefoperazone and doxycycline. PLoS One, 2015. 10(3): p. e0117207.
  4. Miklossy, J., et al., Persisting atypical and cystic forms of Borrelia burgdorferi and local inflammation in Lyme neuroborreliosis. J Neuroinflammation, 2008. 5: p. 40.
  5. Lantos, P.M., P.G. Auwaerter, and G.P. Wormser, A systematic review of Borrelia burgdorferi morphologic variants does not support a role in chronic Lyme disease. Clin Infect Dis, 2014. 58(5): p. 663-71.

4 Replies to "Researchers identify novel drug combinations to combat Lyme persister cells"

  • Sandra Burke, BSN, RN
    08/25/2020 (4:11 am)

    I was recently diagnosed with another UTI and prescribed Fosfomycin 3g one time dose. I have a history of Lyme disease (2015) and haven’t felt “right” since, with a se​quel​ae of lingering vague symptoms including a problematic R knee. I
    took the dose last night for the UTI at 22:45 and woke up (to pee) around 3-4am and my R knee was better. I have been unable to fully extend the R knee since immediately after a scuba dive 2 weeks ago
    in Greece. By “better” I mean to say that I was my range of extension, without pain, was greatly improved as evidenced by, being a stomach sleeper, awakening with the leg flat on the bed vs elevated on pillow, without pain. Something I have been unable to do since after the dive August 8, 2020.

    Through your article and learned about Lyme’s resistant round bodies. What I would like to know is, which OTHER antibiotic would you couple with Fosfomycin to treat ongoing Lyme disease?

    • Dr. Daniel Cameron
      08/25/2020 (7:46 am)

      Your question is complicated. Some bladder complaints e.g., urethritis can lead to joint inflammation. An antibiotic for a UTI can lead to a herxheimer reaction if Lyme disease is the background. I have not used fosfomycin for Lyme disease. He need to work with a doctor or doctors to review your case.

  • Tyler Cartner
    10/14/2016 (2:42 pm)

    This research by Feng and his team, despite being in vitro, is the most hopeful news I’ve read in a while. Dr. Cameron, have you used any of these drug combinations on your patients and if so, to what result? Our daughter suffers from chronic Lyme, which we cannot get rid of, but she’s in London attempting a masters degree amidst the fog of Lyme. She will return in a few months and we want to schedule an appointment with you for that time period. If you were to start her on a treatment regimen here, would you be able to prescribe follow up treatments for her to undergo while in London? Or do you have colleagues she could see in the UK? Please advise and thank you for staying on top of the latest research.

    • Dr. Daniel Cameron
      11/01/2016 (1:35 am)

      I am sorry to year your daughter it is ill. It is difficult managing school and Lyme disease. Most of the drugs are not available in vitro. Dapsone has it’s own issues. Feel free to call my office to see if their might be an approach. I am not familiar with the Doctors in London.

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